Hi,
Yes I understand that it's a show-stopper for you unfortunately.
I have just one MacBook, and on it I don't have the issue. I think that the issue sounds too "complex/unusual" that it could be solved remotely by me (I would need to have a computer like yours to reproduce the steps, do some tests).
To me it does sound like bug in OpenGL graphics driver, since it does work correctly on other systems, and most macs, but only yours/recent have this issue.
If that's the case, you can submit a bug report directly to Apple:
https://bugreport.apple.com/
And provide step by step description of what's wrong, and the expected results, and say that it works on other macs (mine is MacBook Pro, 13" Mid-2010, Core 2 Duo, GeForce 320m, and no issues there, I think other mac users could comment on their system spec and if they're experiencing a similar issue like you)